WebOct 5, 2024 · Objective: To assess the correlation between HMGB1 expression and the patient prognosis in a multicancer context. Methods: The potential oncogenic role of HMGB1 was explored in forty tumors through the TCGA, GEO, and Oncomine datasets. We analyzed the clinical prognostic value and antitumor immunotherapy of HMGB1 in a … WebJul 8, 2024 · The TCGA LIHC dataset was analyzed with R × 64 3.6.1, using the package DEGseq2, Adj. p value < 0.05 and logFC > 2 were regarded as the cut-off criteria. This …

National Cancer Institute

WebApr 26, 2024 · A R package named TCGA-assembler 46 was used to obtain DNA methylation, RNA-seq and CNV data of LIHC. The detail of above three datasets is described in Table 1 . Table 1 The details of three ... WebClinicopathological and molecular characterstics of the TCGA-LIHC dataset has been given in Table 1. Microarray gene expression data from multiple studies was accessed through … lacho\u0027s landscaping

Model based on five tumour immune microenvironment-related …

WebIn the TCGA-LIHC dataset, we observed extensive and significant co-mutations between helicase molecules . Among 363 samples, 176 samples had mutated helicase molecules, at a frequency of 48.48%. Among the 176 samples, DHX9 had the highest mutation frequency of up to 3% , mainly missense mutation. WebJul 12, 2024 · The TCGA-LIHC dataset from the TCGA (The Cancer Genome Atlas) project was used to identify differentially expressed mRNAs in HCC in 371 tumors and 50 adjacent normal tissue samples. Subsequently, we aligned differentially expressed circRNA and mRNA pairs transcribed from the same host gene and divided them into groups … WebAfter differential expression analyses in the TCGA-LIHC dataset, 120 out of 318 tumor-related TFs were screened out for correlation analyses with differentially expressed AKR genes. With the criteria of coefficient >0.3 and p < 0.001, a regulation network with 58 TFs and 5 AKR genes was established . A total of ... lachnospiraceae foods