Plottreeforce
Webb17 juni 2024 · Description. This plots data on the force-directed layout of an URD tree, generated by treeForceDirectedLayout. Once the tree is rotated into a perspective that is appealing, plotTreeForceStore3DView can be used to store that view in the URD object for additional plots. Webb17 juni 2024 · Description. This plots data on the force-directed layout of an URD tree, generated by treeForceDirectedLayout. Once the tree is rotated into a perspective that is …
Plottreeforce
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Webb17 juni 2024 · (Numeric) Distance to this nearest neighbor (default is 10th nearest neighbor) is used as a proxy for local density in the force-directed layout. This is used by … WebbFixed bug in plotTreeForce when plotting TRUE/FALSE metadata; Modified treeForceDirectedLayout to check for graph connectivity prior to calling some FDL …
Webb17 juni 2024 · plotTreeForce - Plot data on 3D force-directed layout representation of tree plotTreeForceStore3DView - Store a plotTreeForce orientation for making many similar …
Webb25 okt. 2024 · plotTreeForce renders using the R package rgl. You can functions from that package to save resulting images (i.e. rgl::rgl.snapshot or rgl::postscript), as is written in … WebbplotTreeForce <- function(object, label, label.type="search", view="default", alpha=0.8, alpha.fade=0.1, size=5, title=NULL, title.cex=3, title.line=0, …
Webb26 apr. 2024 · This is a quick walkthrough of how to use URD to analyze a data set. The zebrafish data has been subset, and only cells belonging to two cell-type lineages (the …
Webb3 maj 2024 · URD:URD-重建分支发展轨迹,URDURD是一种R包,用于使用单细胞RNA测序数据来重建分支树形式的规范或分化过程基础的转录轨迹。它以培育世界树并决定所有命运的名字命名。URD在以下内容中进行了描述:FarrellJA和WangY(等额供款),RiesenfeldSJ,ShekharK,RegevA和SchierAF(等额供款)。 how to sell seeds onlineWebb#Load Tip Cells # ' # ' This loads the cells that belong to each tip into the URD object. This information # ' is required if \code{weighted.fusion=T} during \code{\link{buildTree}} so … how to sell sculptures onlineWebb28 apr. 2024 · Fixed bug in plotTreeForce when plotting discrete values. Fixed bugs in treeForceDirectedLayout that result from cells with duplicate random walk parameters or … how to sell shapes on second lifeWebb17 juni 2024 · Analyses/SupplementaryAnalysis/URD-07-Plotting.Rmd how to sell scrubs to hospitalsWebbRaw Blame. #' URD - Reconstruction of Branching Developmental Trajectories. #'. #' URD reconstructs transcriptional trajectories underlying specification or differentiation. #' … how to sell saffron in ukWebbplotTreeForce: Plot force-directed layout of tree: plotTreeForce2D: Plot tree force-directed layout in 2D: plotTreeForceDual: Plot force-directed layout of tree: … how to sell season tickets for profitWebbCollection of R scripts and code used to analyze single cell RNAseq datasets across postembryonic development and regeneration in the acoel Hofstenia miamia - … how to sell sea moss